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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpm4Tropomyosin alpha-4 chain isoform X2; Belongs to the tropomyosin family. (89 aa)    
Predicted Functional Partners:
Tnnt2
Troponin T, cardiac muscle.
   
 0.963
Tnni3
Troponin I, cardiac muscle.
   
 0.959
Myl1
Myosin light chain 1/3, skeletal muscle isoform isoform X2.
   
 0.943
Actc1
Actin, alpha cardiac muscle 1.
   
 0.922
Tnnt3
Troponin T, fast skeletal muscle isoform X2.
   
 0.882
Tnnt1
Troponin T, slow skeletal muscle isoform X1.
   
 0.882
Tfg
Protein TFG.
    
 0.876
Tpm3
Tropomyosin alpha-3 chain isoform X1; Belongs to the tropomyosin family.
   
0.873
Tnni1
Troponin I, slow skeletal muscle isoform X2.
   
 0.871
Smim20
Small integral membrane protein 20.
   
 0.871
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.