Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Gkn1Gastrokine-1. (183 aa)    
Predicted Functional Partners:
Gkn2
Gastrokine-2.
   
  
 0.981
Gabrd
Gamma-aminobutyric acid receptor subunit delta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
    0.974
Capn9
Calpain-9; Belongs to the peptidase C2 family.
      
 0.814
CUNH16orf91
Protein CCSMST1.
      
 0.701
Tcf23
Transcription factor 23 isoform X2.
      
 0.560
Cblif
Gastric intrinsic factor isoform X1.
      
 0.537
Tff2
Trefoil factor 2.
   
  
 0.515
Mucl3
Diffuse panbronchiolitis critical region protein 1 isoform X2.
   
  
 0.507
Itm2c
Integral membrane protein 2C.
      
 0.488
Itm2b
Integral membrane protein 2B isoform X2.
      
 0.488
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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