Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppm1hProtein phosphatase 1H. (132 aa)    
Predicted Functional Partners:
Rab29
Ras-related protein Rab-7L1.
    
 
 0.920
Rilpl2
RILP-like protein 2 isoform X1.
      
 0.902
Rab35
Ras-related protein Rab-35 isoform X1.
    
 
 0.851
Acbd3
Golgi resident protein GCP60.
    
 
 0.741
Rab8a
Ras-related protein Rab-8A.
    
 
 0.682
Rab8b
Ras-related protein Rab-8B.
    
 
 0.682
Rilpl1
RILP-like protein 1.
      
 0.674
Rab32
Ras-related protein Rab-32.
    
 
 0.671
Rab10
Ras-related protein Rab-10.
    
 
 0.661
Vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
      
 0.612
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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