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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col13a1Collagen alpha-1(XIII) chain isoform X4. (744 aa)    
Predicted Functional Partners:
Plod3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.728
C1qc
Complement C1q subcomponent subunit C.
  
 
 
0.689
Plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
   
 0.688
Plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.688
Tep1
Telomerase protein component 1.
    
 0.673
P4ha1
Prolyl 4-hydroxylase subunit alpha-1.
    
 0.647
Itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.645
Itga1
Integrin alpha-1; Belongs to the integrin alpha chain family.
     
 0.638
P4hb
Protein disulfide-isomerase.
    
  0.624
P3h2
Prolyl 3-hydroxylase 2.
    
  0.616
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.