Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Abca1 | Zic3 | ENSMAUP00000014527 | ENSMAUP00000007832 | ATP-binding cassette sub-family A member 1 isoform X2. | Zinc finger protein ZIC 3. | 0.632 |
Acvr2b | Svep1 | ENSMAUP00000023301 | ENSMAUP00000016268 | Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X1. | 0.437 |
Acvr2b | Zic3 | ENSMAUP00000023301 | ENSMAUP00000007832 | Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. | Zinc finger protein ZIC 3. | 0.633 |
App | Ripk4 | ENSMAUP00000002478 | ENSMAUP00000018746 | Amyloid beta A4 protein. | Receptor-interacting serine/threonine-protein kinase 4. | 0.441 |
App | Svep1 | ENSMAUP00000002478 | ENSMAUP00000016268 | Amyloid beta A4 protein. | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X1. | 0.463 |
App | Zic3 | ENSMAUP00000002478 | ENSMAUP00000007832 | Amyloid beta A4 protein. | Zinc finger protein ZIC 3. | 0.600 |
Gtf3c3 | Svep1 | ENSMAUP00000020879 | ENSMAUP00000016268 | General transcription factor 3C polypeptide 3. | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X1. | 0.571 |
Gtf3c3 | Zic3 | ENSMAUP00000020879 | ENSMAUP00000007832 | General transcription factor 3C polypeptide 3. | Zinc finger protein ZIC 3. | 0.603 |
Lamtor2 | Ripk4 | ENSMAUP00000000695 | ENSMAUP00000018746 | Ragulator complex protein LAMTOR2 isoform X1. | Receptor-interacting serine/threonine-protein kinase 4. | 0.510 |
Lamtor2 | Zic3 | ENSMAUP00000000695 | ENSMAUP00000007832 | Ragulator complex protein LAMTOR2 isoform X1. | Zinc finger protein ZIC 3. | 0.531 |
Pou5f1 | Sox2 | ENSMAUP00000012716 | ENSMAUP00000018490 | POU domain protein. | Transcription factor SOX-2. | 0.994 |
Pou5f1 | Zic3 | ENSMAUP00000012716 | ENSMAUP00000007832 | POU domain protein. | Zinc finger protein ZIC 3. | 0.530 |
Ripk4 | App | ENSMAUP00000018746 | ENSMAUP00000002478 | Receptor-interacting serine/threonine-protein kinase 4. | Amyloid beta A4 protein. | 0.441 |
Ripk4 | Lamtor2 | ENSMAUP00000018746 | ENSMAUP00000000695 | Receptor-interacting serine/threonine-protein kinase 4. | Ragulator complex protein LAMTOR2 isoform X1. | 0.510 |
Ripk4 | Sufu | ENSMAUP00000018746 | ENSMAUP00000018499 | Receptor-interacting serine/threonine-protein kinase 4. | Suppressor of fused homolog; Negative regulator in the hedgehog signaling pathway. Down- regulates GLI1-mediated transactivation of target genes. Part of a corepressor complex that acts on DNA-bound GLI1. May also act by linking GLI1 to BTRC and thereby targeting GLI1 to degradation by the proteasome. Sequesters GLI1, GLI2 and GLI3 in the cytoplasm, this effect is overcome by binding of STK36 to both SUFU and a GLI protein. Negative regulator of beta-catenin signaling. Regulates the formation of either the repressor form (GLI3R) or the activator form (GLI3A) of the full-length form of [...] | 0.528 |
Ripk4 | Svep1 | ENSMAUP00000018746 | ENSMAUP00000016268 | Receptor-interacting serine/threonine-protein kinase 4. | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X1. | 0.880 |
Ripk4 | Zic3 | ENSMAUP00000018746 | ENSMAUP00000007832 | Receptor-interacting serine/threonine-protein kinase 4. | Zinc finger protein ZIC 3. | 0.531 |
Sox2 | Pou5f1 | ENSMAUP00000018490 | ENSMAUP00000012716 | Transcription factor SOX-2. | POU domain protein. | 0.994 |
Sox2 | Zic3 | ENSMAUP00000018490 | ENSMAUP00000007832 | Transcription factor SOX-2. | Zinc finger protein ZIC 3. | 0.549 |
Sufu | Ripk4 | ENSMAUP00000018499 | ENSMAUP00000018746 | Suppressor of fused homolog; Negative regulator in the hedgehog signaling pathway. Down- regulates GLI1-mediated transactivation of target genes. Part of a corepressor complex that acts on DNA-bound GLI1. May also act by linking GLI1 to BTRC and thereby targeting GLI1 to degradation by the proteasome. Sequesters GLI1, GLI2 and GLI3 in the cytoplasm, this effect is overcome by binding of STK36 to both SUFU and a GLI protein. Negative regulator of beta-catenin signaling. Regulates the formation of either the repressor form (GLI3R) or the activator form (GLI3A) of the full-length form of [...] | Receptor-interacting serine/threonine-protein kinase 4. | 0.528 |
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