STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrif1Ligand-dependent nuclear receptor-interacting factor 1 isoform X1. (751 aa)    
Predicted Functional Partners:
Smchd1
Structural maintenance of chromosomes flexible hinge domain-containing protein 1.
    
 
 0.700
Sdad1
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
      
 0.557
Cbx5
Chromobox protein homolog 5 isoform X3.
    
 
 0.555
Srbd1
S1 RNA-binding domain-containing protein 1.
      
 0.536
Rrp15
RRP15-like protein.
      
 0.522
Zfp512
Zinc finger protein 512.
      
 0.518
Nipbl
Nipped-B protein.
    
 
 0.509
Rmnd5a
Protein RMD5 homolog A.
      
 0.499
Herc2
E3 ubiquitin-protein ligase HERC2.
      
 0.448
Cbx3
Chromobox 3.
    
 
 0.434
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.