STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ogfod1Prolyl 3-hydroxylase OGFOD1. (545 aa)    
Predicted Functional Partners:
Tufm
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.902
LOC101835209
Synaptonemal complex protein 3-like.
   
 
 0.853
Sycp3
Synaptonemal complex protein 3; Component of the synaptonemal complexes (SCS), formed between homologous chromosomes during meiotic prophase. Required for centromere pairing during meiosis in male germ cells. Required for normal meiosis during spermatogenesis and male fertility. Plays a lesser role in female fertility. Required for efficient phosphorylation of HORMAD1 and HORMAD2; Belongs to the XLR/SYCP3 family.
   
 
 0.853
LOC101825457
X-linked lymphocyte-regulated protein PM1-like.
   
 
 0.853
L3hypdh
trans-3-hydroxy-L-proline dehydratase isoform X2.
    
  0.852
Crym
Ketimine reductase mu-crystallin.
    
  0.844
Cpox
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
   
  
 0.765
Polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.751
Bms1
Ribosome biogenesis protein BMS1 homolog.
   
    0.744
Gspt1
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1.
   
 
 0.675
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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