STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccbe1Collagen and calcium-binding EGF domain-containing protein 1. (396 aa)    
Predicted Functional Partners:
Vegfc
Vascular endothelial growth factor C isoform X1; Belongs to the PDGF/VEGF growth factor family.
    
 0.794
Adamts3
A disintegrin and metalloproteinase with thrombospondin motifs 3.
      
 0.694
Vegfd
Vascular endothelial growth factor D isoform X3; Belongs to the PDGF/VEGF growth factor family.
    
 0.678
C8b
Complement component C8 beta chain isoform X1.
   
 0.657
Tnfrsf13c
TNF receptor superfamily member 13C.
    
 0.645
Il1r1
Interleukin-1 receptor type 1.
    
  0.634
Il1rl1
Interleukin-1 receptor-like 1.
    
  0.634
Il1rl2
Interleukin-1 receptor-like 2.
    
  0.634
Actg2
Actin, gamma-enteric smooth muscle.
    
 0.620
Il1b
Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family.
    
 0.615
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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