STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col4a4Collagen alpha-4(IV) chain. (157 aa)    
Predicted Functional Partners:
Itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.884
Itgav
Integrin alpha-V isoform X1; Belongs to the integrin alpha chain family.
    
 0.883
Itga1
Integrin alpha-1; Belongs to the integrin alpha chain family.
     
 0.878
Itga3
Integrin alpha-3 isoform X2; Belongs to the integrin alpha chain family.
    
 0.875
Itgb4
Integrin beta.
    
 0.871
Itga6
Integrin alpha-6 isoform X1; Belongs to the integrin alpha chain family.
    
 0.871
Itgb5
Integrin beta 5.
    
 0.866
Itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.866
Itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.866
Itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.863
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.