STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx58Putative ATP-dependent RNA helicase DDX58. (908 aa)    
Predicted Functional Partners:
Mavs
Mitochondrial antiviral-signaling protein isoform X1.
    
 0.999
Trim25
E3 ubiquitin/ISG15 ligase TRIM25.
   
 0.998
Rnf135
E3 ubiquitin-protein ligase RNF135 isoform X2.
   
 0.994
Isg15
Ubiquitin-like protein ISG15.
   
 0.991
Dhx58
Probable ATP-dependent RNA helicase DHX58.
   
0.987
Eif2ak2
Interferon-induced, double-stranded RNA-activated protein kinase isoform X1.
   
 0.977
Stat1
Signal transducer and activator of transcription.
   
 0.970
Usp18
Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.
   
 
 0.951
Rps27a
ubiquitin-40S ribosomal protein S27a.
    
 0.948
ENSMAUP00000019431
annotation not available
    
 0.948
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.