STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW12649.1YceI-like domain-containing protein; Belongs to the UPF0312 family. (180 aa)    
Predicted Functional Partners:
SFW12662.1
Hypothetical protein.
 
     0.954
SFW12636.1
Planctomycete cytochrome C.
 
     0.925
SFW12623.1
tRNA_anti-like.
 
     0.833
SFW82648.1
Hypothetical protein.
 
     0.784
SFW12611.1
Outer membrane protein beta-barrel domain-containing protein.
 
     0.663
SFW12599.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.452
SFW86064.1
TfoX N-terminal domain-containing protein.
  
     0.401
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.