Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFW14607.1 | SFW14621.1 | SAMN05661012_00229 | SAMN05661012_00230 | Hypothetical protein. | Hypothetical protein. | 0.535 |
SFW14621.1 | SFW14607.1 | SAMN05661012_00230 | SAMN05661012_00229 | Hypothetical protein. | Hypothetical protein. | 0.535 |
SFW14621.1 | SFW33796.1 | SAMN05661012_00230 | SAMN05661012_01255 | Hypothetical protein. | Cell surface protein SprA. | 0.581 |
SFW14621.1 | SFW38774.1 | SAMN05661012_00230 | SAMN05661012_01475 | Hypothetical protein. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | 0.683 |
SFW14621.1 | SFW44984.1 | SAMN05661012_00230 | SAMN05661012_01789 | Hypothetical protein. | Cell surface protein SprA. | 0.581 |
SFW14621.1 | SFW45444.1 | SAMN05661012_00230 | SAMN05661012_01833 | Hypothetical protein. | Molecular chaperone HtpG. | 0.947 |
SFW14621.1 | SFW77021.1 | SAMN05661012_00230 | SAMN05661012_04453 | Hypothetical protein. | Polynucleotide kinase-phosphatase. | 0.898 |
SFW14621.1 | SFW83344.1 | SAMN05661012_00230 | SAMN05661012_05393 | Hypothetical protein. | Hypothetical protein. | 0.755 |
SFW14621.1 | dnaK | SAMN05661012_00230 | SAMN05661012_03027 | Hypothetical protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.768 |
SFW14621.1 | infA | SAMN05661012_00230 | SAMN05661012_02604 | Hypothetical protein. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.670 |
SFW14621.1 | tgt | SAMN05661012_00230 | SAMN05661012_03706 | Hypothetical protein. | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] | 0.668 |
SFW33796.1 | SFW14621.1 | SAMN05661012_01255 | SAMN05661012_00230 | Cell surface protein SprA. | Hypothetical protein. | 0.581 |
SFW38774.1 | SFW14621.1 | SAMN05661012_01475 | SAMN05661012_00230 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | Hypothetical protein. | 0.683 |
SFW38774.1 | SFW45444.1 | SAMN05661012_01475 | SAMN05661012_01833 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | Molecular chaperone HtpG. | 0.986 |
SFW38774.1 | SFW77021.1 | SAMN05661012_01475 | SAMN05661012_04453 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | Polynucleotide kinase-phosphatase. | 0.476 |
SFW38774.1 | SFW83344.1 | SAMN05661012_01475 | SAMN05661012_05393 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | Hypothetical protein. | 0.748 |
SFW38774.1 | dnaK | SAMN05661012_01475 | SAMN05661012_03027 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.767 |
SFW44984.1 | SFW14621.1 | SAMN05661012_01789 | SAMN05661012_00230 | Cell surface protein SprA. | Hypothetical protein. | 0.581 |
SFW45444.1 | SFW14621.1 | SAMN05661012_01833 | SAMN05661012_00230 | Molecular chaperone HtpG. | Hypothetical protein. | 0.947 |
SFW45444.1 | SFW38774.1 | SAMN05661012_01833 | SAMN05661012_01475 | Molecular chaperone HtpG. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B). | 0.986 |
page 1 of 2