STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW34156.1Glycogen debranching enzyme, putative. (635 aa)    
Predicted Functional Partners:
SFW85210.1
Alpha-glucan phosphorylases.
 
 0.946
SFW34173.1
Fructose-bisphosphate aldolase, class I.
       0.727
SFW33063.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
 
 0.630
SFW34141.1
DNA polymerase (family 10).
       0.559
SFW34123.1
Hypothetical protein.
       0.554
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.487
SFW24477.1
Maltooligosyltrehalose trehalohydrolase.
  
 
 0.451
SFW80226.1
Maltooligosyl trehalose hydrolase.
  
 
 0.451
SFW34189.1
Peroxiredoxin.
       0.433
SFW34111.1
alpha-N-arabinofuranosidase.
       0.431
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.