STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW42382.1VWA domain containing CoxE-like protein. (376 aa)    
Predicted Functional Partners:
SFW42397.1
Hypothetical protein.
   
 0.955
SFW42410.1
AAA domain (dynein-related subfamily).
 
  
 0.946
SFW42422.1
Hypothetical protein.
 
     0.930
SFW42480.1
SWIM zinc finger.
 
     0.923
SFW42518.1
Hypothetical protein.
       0.612
SFW42533.1
Protein of unknown function.
       0.571
SFW42545.1
MFS transporter, MHS family, alpha-ketoglutarate permease.
       0.563
SFW88977.1
SWIM zinc finger.
  
     0.542
SFW86095.1
TIGR02452 family protein.
  
     0.434
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
    
 
 0.420
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.