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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW47417.1AraC-type DNA-binding protein. (249 aa)    
Predicted Functional Partners:
SFW47401.1
Beta-lactamase class A.
       0.773
SFW47387.1
DoxX-like family protein.
       0.762
SFW88121.1
AraC-type DNA-binding protein.
 
   0.755
SFW12039.1
AraC-type DNA-binding protein.
  
   0.744
SFW80621.1
Transcriptional regulator, AraC family.
  
   0.711
SFW19318.1
Cupin domain-containing protein.
  
   0.700
SFW67853.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  0.697
SFW82527.1
AraC-type DNA-binding protein.
  
   0.682
SFW38189.1
AraC-type DNA-binding protein.
  
   0.681
SFW64710.1
AraC-type DNA-binding protein.
  
   0.681
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
Server load: medium (44%) [HD]
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