STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW47614.1TonB-linked outer membrane protein, SusC/RagA family. (999 aa)    
Predicted Functional Partners:
SFW47600.1
Starch-binding associating with outer membrane.
 
 
   0.926
SFW22461.1
Starch-binding associating with outer membrane.
  
 
   0.793
SFW52531.1
Starch-binding associating with outer membrane.
  
 
   0.785
SFW32187.1
Starch-binding associating with outer membrane.
  
 
   0.774
SFW62847.1
Starch-binding associating with outer membrane.
  
 
   0.766
SFW73196.1
SusD family protein.
  
 
   0.759
SFW83231.1
Starch-binding associating with outer membrane.
  
 
   0.751
SFW39058.1
SusD family protein.
  
 
   0.729
SFW79184.1
Starch-binding associating with outer membrane.
  
 
   0.709
SFW75637.1
Starch-binding associating with outer membrane.
  
 
   0.707
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.