Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFW60596.1 | SFW87885.1 | SAMN05661012_02891 | SAMN05661012_06148 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.608 |
SFW60596.1 | rpmD | SAMN05661012_02891 | SAMN05661012_02600 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | Large subunit ribosomal protein L30. | 0.862 |
SFW60596.1 | rsmA | SAMN05661012_02891 | SAMN05661012_05002 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.441 |
SFW60596.1 | trmB | SAMN05661012_02891 | SAMN05661012_03845 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.744 |
SFW60596.1 | truB | SAMN05661012_02891 | SAMN05661012_02639 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.538 |
SFW69816.1 | SFW87885.1 | SAMN05661012_03630 | SAMN05661012_06148 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.441 |
SFW69816.1 | rpmD | SAMN05661012_03630 | SAMN05661012_02600 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Large subunit ribosomal protein L30. | 0.862 |
SFW69816.1 | trmB | SAMN05661012_03630 | SAMN05661012_03845 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.646 |
SFW69816.1 | truB | SAMN05661012_03630 | SAMN05661012_02639 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.508 |
SFW71932.1 | SFW71939.1 | SAMN05661012_03843 | SAMN05661012_03844 | Hypothetical protein. | Hypothetical protein. | 0.561 |
SFW71932.1 | trmB | SAMN05661012_03843 | SAMN05661012_03845 | Hypothetical protein. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.581 |
SFW71939.1 | SFW71932.1 | SAMN05661012_03844 | SAMN05661012_03843 | Hypothetical protein. | Hypothetical protein. | 0.561 |
SFW71939.1 | trmB | SAMN05661012_03844 | SAMN05661012_03845 | Hypothetical protein. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.815 |
SFW82620.1 | rsmA | SAMN05661012_05271 | SAMN05661012_05002 | seryl-tRNA synthetase. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.759 |
SFW82620.1 | tilS | SAMN05661012_05271 | SAMN05661012_01088 | seryl-tRNA synthetase. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.424 |
SFW82620.1 | trmB | SAMN05661012_05271 | SAMN05661012_03845 | seryl-tRNA synthetase. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.830 |
SFW82620.1 | truB | SAMN05661012_05271 | SAMN05661012_02639 | seryl-tRNA synthetase. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.440 |
SFW87885.1 | SFW60596.1 | SAMN05661012_06148 | SAMN05661012_02891 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | 0.608 |
SFW87885.1 | SFW69816.1 | SAMN05661012_06148 | SAMN05661012_03630 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.441 |
SFW87885.1 | rsmA | SAMN05661012_06148 | SAMN05661012_05002 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.433 |
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