STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW72212.1RNA polymerase sigma factor, sigma-70 family. (234 aa)    
Predicted Functional Partners:
SFW13842.1
Signal transduction histidine kinase.
 
 
 0.954
SFW46262.1
Signal transduction histidine kinase.
   
 0.944
SFW75843.1
PAS domain S-box-containing protein.
   
 0.944
SFW73320.1
Signal transduction histidine kinase.
   
 0.898
SFW85644.1
Signal transduction histidine kinase.
   
 0.878
SFW24961.1
PAS domain S-box-containing protein.
  
 0.852
SFW63939.1
Signal transduction histidine kinase.
 
  0.816
SFW22844.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.785
SFW69704.1
Histidine kinase.
  
  0.780
SFW75268.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.772
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
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