STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW84486.1F5/8 type C domain-containing protein. (821 aa)    
Predicted Functional Partners:
SFW83811.1
Chitinase.
  
 0.875
SFW83803.1
Glycosyl hydrolases family 16.
  
 0.789
SFW90031.1
Por secretion system C-terminal sorting domain-containing protein.
 
  
 0.788
SFW78150.1
Por secretion system C-terminal sorting domain-containing protein.
  
 0.778
SFW88438.1
Processive endocellulase.
 
 
 0.775
SFW69638.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
     
 0.745
SFW83807.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
  0.731
SFW83903.1
Ricin-type beta-trefoil lectin domain-like.
  
  
  0.731
SFW89517.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
  0.729
SFW52036.1
Beta-glucosidase.
    
 0.702
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.