STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW85184.1AraC-type DNA-binding protein. (308 aa)    
Predicted Functional Partners:
SFW12039.1
AraC-type DNA-binding protein.
  
     0.728
SFW27065.1
AraC-type DNA-binding protein.
  
     0.719
SFW85172.1
L-rhamnose-H+ transport protein.
 
     0.717
SFW85181.1
Rhamnulokinase.
 
     0.687
SFW69392.1
AraC-type DNA-binding protein.
  
     0.669
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
     0.658
SFW15213.1
AraC-type DNA-binding protein.
  
     0.652
SFW47417.1
AraC-type DNA-binding protein.
  
   0.641
SFW69986.1
Helix-turn-helix domain-containing protein.
  
     0.640
SFW73470.1
AraC-type DNA-binding protein.
  
     0.636
Your Current Organism:
Chitinophaga sancti
NCBI taxonomy Id: 1004
Other names: ATCC 23092, C. sancti, DSM 784, Flexibacter sancti, Flexibacter santosii, IFO 15057, LMG 8377, LMG:8377, NBRC 15057
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.