STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001854765_03709Unannotated protein. (286 aa)    
Predicted Functional Partners:
GCA_001854765_03708
Unannotated protein.
     0.886
GCA_001854765_01809
Unannotated protein.
  
     0.756
GCA_001854765_01289
Unannotated protein.
 
   
 0.747
GCA_001854765_00663
Unannotated protein.
    
   0.666
GCA_001854765_01156
Unannotated protein.
 
 
 0.647
GCA_001854765_01157
Unannotated protein.
 
 
 0.626
GCA_001854765_04204
Unannotated protein.
 
   
 0.614
GCA_001854765_00664
Unannotated protein.
   
   0.590
GCA_001854765_02813
Unannotated protein.
    
   0.590
GCA_001854765_03349
Unannotated protein.
 
 
 0.583
Your Current Organism:
Vibrio sonorensis
NCBI taxonomy Id: 1004316
Other names: CECT 9100, DSM 102190, V. sonorensis, Vibrio sonorensis Gonzalez-Castillo et al. 2017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.