STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001012815_03417Unannotated protein. (357 aa)    
Predicted Functional Partners:
GCA_001012815_03416
Unannotated protein.
 
 
 0.998
GCA_001012815_03415
Unannotated protein.
 
 
 0.994
GCA_001012815_03412
Unannotated protein.
 
 
 0.991
GCA_001012815_03418
Unannotated protein.
     0.986
GCA_001012815_04416
Unannotated protein.
 
 
 
 0.980
GCA_001012815_03413
Unannotated protein.
  
 
 0.966
GCA_001012815_03414
Unannotated protein.
  
 
 0.966
GCA_001012815_03342
Unannotated protein.
  
 
 0.929
GCA_001012815_00344
Unannotated protein.
 
 
 
 0.840
GCA_001012815_00345
Unannotated protein.
 
 
 
 0.818
Your Current Organism:
Vibrio mexicanus
NCBI taxonomy Id: 1004326
Other names: CECT 8828, DSM 100338, V. mexicanus, Vibrio mexicanus Gonzlez-Castillo et al. 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.