STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pus1TRNA pseudouridine synthase A, mitochondrial isoform X1. (473 aa)    
Predicted Functional Partners:
Wdr4
TRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1.
   
 
 0.893
Dkc1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.819
Trub2
Mitochondrial mRNA pseudouridine synthase TRUB2.
   
 0.814
Dus3l
Dihydrouridine synthase 3-like (S. cerevisiae).
  
 
 0.776
Mrpl17
39S ribosomal protein L17, mitochondrial.
  
  
 0.763
Pus7
Pseudouridylate synthase 7 homolog.
   
 
 0.747
Ddx18
ATP-dependent RNA helicase DDX18/HAS1.
   
  
 0.734
Wdr12
Ribosome biogenesis protein WDR12.
   
   0.720
Polr1c
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
  
  
 0.693
Polr2c
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.693
Your Current Organism:
Meriones unguiculatus
NCBI taxonomy Id: 10047
Other names: M. unguiculatus, Mongolian gerbil, Mongolian jird
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.