STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmcd1LIM and cysteine-rich domains protein 1. (365 aa)    
Predicted Functional Partners:
Gata6
Transcription factor GATA-6.
    
 0.949
Gata4
Transcription factor GATA-4.
    
 0.577
Gata5
Transcription factor GATA-5.
    
 0.577
Gata1
GATA binding protein 1.
    
 0.541
Vstm2b
V-set and transmembrane domain-containing protein 2B isoform X1.
      
 0.447
Dvl1
Segment polarity protein dishevelled homolog DVL-1 isoform X1.
    
 0.427
Dvl3
Segment polarity protein dishevelled homolog DVL-3.
    
 0.427
Dvl2
Segment polarity protein dishevelled homolog DVL-2 isoform X1.
    
 0.427
Mrps10
28S ribosomal protein S10, mitochondrial.
      
 0.414
I830077J02Rik
Transmembrane protein C1orf162 homolog.
      
 0.405
Your Current Organism:
Meriones unguiculatus
NCBI taxonomy Id: 10047
Other names: M. unguiculatus, Mongolian gerbil, Mongolian jird
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.