STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxRRedox-sensitive transcriptional activator. (161 aa)    
Predicted Functional Partners:
bvgS
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
   
 
 0.541
cadR
Transcriptional regulator.
  
   
 0.519
CFU_1490
Hypothetical protein.
       0.513
cueR
MerR transcriptional regulator.
  
   
 0.509
CFU_1493
Putative transcriptional regulatory protein.
 
   
 0.436
CFU_1491
Hypothetical protein.
       0.434
Your Current Organism:
Collimonas fungivorans
NCBI taxonomy Id: 1005048
Other names: C. fungivorans Ter331, Collimonas fungivorans Ter331, Collimonas fungivorans str. Ter331, Collimonas fungivorans strain Ter331, beta proteobacterium Ter331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.