STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFU_2041VgrG protein. (206 aa)    
Predicted Functional Partners:
CFU_2040
Phage protein D.
   
 0.984
CFU_2043
Phage baseplate assembly protein W.
 
  
 0.959
CFU_2037
Hypothetical protein.
 
  
 0.958
CFU_2039
Uncharacterized protein containing LysM domain.
 
    0.950
CFU_2042
Hypothetical protein.
 
   
 0.941
CFU_2045
Hypothetical protein.
 
   
 0.937
CFU_2046
Hypothetical protein.
 
   
 0.937
CFU_2035
Phage tail sheath protein FI.
 
   
 0.926
CFU_2047
Hypothetical protein.
 
     0.926
CFU_2049
Hypothetical protein.
 
     0.922
Your Current Organism:
Collimonas fungivorans
NCBI taxonomy Id: 1005048
Other names: C. fungivorans Ter331, Collimonas fungivorans Ter331, Collimonas fungivorans str. Ter331, Collimonas fungivorans strain Ter331, beta proteobacterium Ter331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.