STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN62329.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
SFO38760.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.655
SFO40525.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.591
SFO10890.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.588
SFN62424.1
Xanthine dehydrogenase accessory factor.
 
     0.577
SFO37961.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.556
SFN62357.1
Xanthine dehydrogenase small subunit.
       0.536
SFN62444.1
Putative MFS transporter, AGZA family, xanthine/uracil permease.
 
     0.528
SFN62377.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
       0.513
SFN38194.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.467
SFN79685.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.460
Your Current Organism:
Roseovarius lutimaris
NCBI taxonomy Id: 1005928
Other names: DSM 28463, JCM 17743, KACC 16185, R. lutimaris, Roseovarius lutimaris Choi et al. 2013, Roseovarius sp. 112, strain 112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.