STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN71146.1Phenylpropionate dioxygenase, large terminal subunit. (385 aa)    
Predicted Functional Partners:
SFN71131.1
Hypothetical protein.
 
     0.950
SFN46978.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.678
SFN43170.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.644
SFN87126.1
Sarcosine oxidase subunit delta.
 
    0.644
SFN87155.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.636
SFO11659.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
    
 0.636
SFN36893.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
 
  0.624
SFN47668.1
Hypothetical protein.
  
 
 0.560
SFO04478.1
Dimethylsulfoniopropionate lyase DddP.
  
     0.555
SFN87185.1
Sarcosine oxidase subunit gamma.
 
    0.537
Your Current Organism:
Roseovarius lutimaris
NCBI taxonomy Id: 1005928
Other names: DSM 28463, JCM 17743, KACC 16185, R. lutimaris, Roseovarius lutimaris Choi et al. 2013, Roseovarius sp. 112, strain 112
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.