STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_0317PspA/IM30 family protein. (232 aa)    
Predicted Functional Partners:
GBAG_0316
COG3789; Protein involved in biological_process.
 
  
 0.980
GBAG_0319
Protein involved in biological_process.
 
     0.951
GBAG_0318
Putative potassium channel protein.
 
     0.947
pspC
Phage shock protein C.
  
 
 0.907
yjfL
Uncharacterized DUF350 family membrane protein; Protein involved in biological_process.
 
     0.898
pspB
Protein involved in phage shock and regulation of transcription, DNA-templated.
 
 
 0.825
arcB
Aerobic respiration control sensor protein; Protein involved in phosphorelay response regulator activity, signal transducer activity, ATP binding, phosphorelay sensor kinase activity, peptidyl-histidine phosphorylation, regulation of transcription, DNA-templated, protein autophosphorylation, (DEPRECATED) transcription, phosphorelay signal transduction system and signal transduction.
   
 
 0.811
evgS
Two-component regulatory system hybrid sensory histidine kinase; Protein involved in ATP binding, phosphorelay response regulator activity, signal transducer activity, phosphorelay sensor kinase activity, transporter activity, peptidyl-histidine phosphorylation, regulation of transcription, DNA-templated, protein autophosphorylation, phosphorelay signal transduction system, signal transduction and transport.
    
 
 0.758
barA
Sensory histidine kinase; Protein involved in signal transducer activity, ATP binding, phosphorelay response regulator activity, phosphorelay sensor kinase activity, peptidyl-histidine phosphorylation, regulation of transcription, DNA-templated, response to hydrogen peroxide, protein autophosphorylation, (DEPRECATED) transcription, signal transduction and phosphorelay signal transduction system.
    
 
 0.756
pspF
Psp operon transcriptional activator; Protein involved in ATP binding, transcription factor binding, sequence-specific DNA binding, DNA binding, nucleotide binding, nucleoside-triphosphatase activity and regulation of transcription, DNA-templated.
   
 
 0.707
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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