STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygjVInner membrane protein. (181 aa)    
Predicted Functional Partners:
uxaA
Altronate hydrolase; Protein involved in hydro-lyase activity.
 
     0.597
nlpE
NlpE family lipoprotein.
  
     0.533
GBAG_4125
YidS family protein.
  
    0.517
GBAG_0228
Putative vimentin; Protein involved in GTPase activity and GTP binding.
  
     0.506
uxaC
Protein involved in glucuronate isomerase activity and glucuronate catabolic process.
       0.505
GBAG_2375
L-arabinose-binding periplasmic protein; TC:3.A.1.2.2.
  
     0.479
ycfT
Putative acyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups.
  
     0.476
GBAG_0473
Integrase; Protein involved in DNA integration and DNA recombination.
  
     0.463
nudD
GDP-mannose mannosyl hydrolase; Hydrolyzes GDP-mannose; Belongs to the Nudix hydrolase family.
  
     0.451
uspB
Universal stress protein B.
  
     0.434
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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