STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_0456FIG00641766; Protein involved in sequence-specific DNA binding transcription factor activity and regulation of transcription, DNA-templated. (233 aa)    
Predicted Functional Partners:
GBAG_0454
NgrB family protein; Protein involved in GTP binding.
 
    0.775
GBAG_0228
Putative vimentin; Protein involved in GTPase activity and GTP binding.
  
     0.770
GBAG_3688
Protein involved in biological_process.
  
     0.716
GBAG_0458
FIG00642476; Protein involved in biological_process.
  
    0.663
GBAG_0457
Putative inner membrane protein; Protein involved in biological_process.
       0.639
GBAG_2017
Zinc-type alcohol dehydrogenase; Protein involved in zinc ion binding, oxidoreductase activity and oxidation-reduction process.
  
     0.615
GBAG_0459
Protein involved in biological_process.
  
    0.595
GBAG_2016
Sugar-phosphate isomerase/epimerase.
  
     0.594
GBAG_0455
FIG01224161; Protein involved in biological_process.
 
    0.562
WcaC
WcaC family colanic acid biosynthesis glycosyltransferase; Protein involved in biosynthetic process.
  
     0.562
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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