STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (126 aa)    
Predicted Functional Partners:
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 0.999
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.988
GBAG_2213
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase; Protein involved in transaminase activity, pyridoxal phosphate binding, 4-aminobutyrate transaminase activity, gamma-aminobutyric acid catabolic process and gamma-aminobutyric acid metabolic process; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.909
GabT
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase; Protein involved in transaminase activity, pyridoxal phosphate binding, 4-aminobutyrate transaminase activity, gamma-aminobutyric acid catabolic process and gamma-aminobutyric acid metabolic process; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.909
GBAG_0237
Glutamate decarboxylase; Protein involved in carboxy-lyase activity, pyridoxal phosphate binding, glutamate decarboxylase activity, glutamate decarboxylation to succinate, carboxylic acid metabolic process and glutamate metabolic process; Belongs to the group II decarboxylase family.
     
 0.904
ansA
L-asparaginase; Protein involved in asparaginase activity and cellular amino acid metabolic process.
     
 0.868
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.841
aspA
Protein involved in lyase activity, aspartate ammonia-lyase activity, catalytic activity, cellular amino acid metabolic process, tricarboxylic acid cycle and aspartate metabolic process.
     
 0.828
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.811
asnB
Protein involved in asparagine synthase (glutamine-hydrolyzing) activity, asparagine biosynthetic process and metabolic process.
     
  0.800
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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