STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_0780Isochorismatase family protein; FIG002283; Protein involved in catalytic activity and metabolic process. (213 aa)    
Predicted Functional Partners:
GBAG_0782
AepA family regulatory protein; Protein involved in hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds.
 
   
 0.931
GBAG_0781
Antibiotic biosynthesis monooxygenase.
       0.784
GBAG_2079
AepA family regulatory protein; Protein involved in hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds.
 
   
 0.783
GBAG_2081
FIG026426; Protein involved in biological_process.
 
    0.750
GBAG_2082
FIG026426; Protein involved in biological_process.
 
    0.744
msyB
MsyB family acidic protein.
   
    0.515
GBAG_0779
Maltodextrin glucosidase; Protein involved in catalytic activity, cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds and carbohydrate metabolic process.
  
    0.466
GBAG_1575
FIG00637864; Protein involved in biological_process.
   
    0.459
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
   0.408
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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