STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjFProtein involved in biological_process. (354 aa)    
Predicted Functional Partners:
ycjX
Nucleoside triphosphate hydrolase; Protein involved in biological_process.
 
  
 0.991
GBAG_3539
Lipoate-protein ligase A; Overlaps another CDS with the same product name.
  
     0.738
yfhK
Protein involved in phosphorelay sensor kinase activity, ATP binding, signal transducer activity, peptidyl-histidine phosphorylation, protein autophosphorylation and signal transduction.
  
     0.689
tyrR
TyrR family transcriptional repressor; Protein involved in ATP binding, transcription factor binding, signal transducer activity, DNA binding, nucleotide binding, nucleoside-triphosphatase activity, aromatic compound catabolic process, regulation of transcription, DNA-templated, phosphorelay signal transduction system, (DEPRECATED) transcription and signal transduction.
   
 0.675
yhcB
Putative cytochrome oxidase subunit III; Protein involved in oxidation-reduction process.
  
     0.673
yecM
YecM family protein.
  
     0.629
mepA
Murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.
  
     0.598
GBAG_0106
YjaG famiy protein; Protein involved in biological_process.
  
     0.576
GBAG_4218
Putative exported protein.
  
     0.558
zapB
Putative cytoplasmic protein; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
     0.525
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.