STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_2347Rhamnogalacturonide transporter. (529 aa)    
Predicted Functional Partners:
GBAG_2346
Rhamnogalacturonides degradation protein; Protein involved in catalytic activity.
 
    0.845
yihP
Protein involved in transporter activity and sodium ion transport.
  
     0.683
GBAG_2448
FIG00553532; Protein involved in biological_process.
  
     0.509
GBAG_2345
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Protein involved in lipid A biosynthetic process.
       0.478
GBAG_2405
Putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Protein involved in isomerase activity and carbohydrate metabolic process.
  
     0.464
GBAG_3939
Epimerase.
 
    0.442
GBAG_2756
LacI family transcriptional regulator; Protein involved in sequence-specific DNA binding transcription factor activity, DNA binding and regulation of transcription, DNA-templated.
  
     0.438
flhE
FlhE family flagellar protein; Protein involved in (OBSOLETE) flagellum organization.
       0.436
GBAG_2951
Protein involved in biological_process.
  
     0.436
flhA
FlhA family flagellar biosynthesis protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
       0.432
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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