STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_2394Alginate lyase; FIG01220424; Protein involved in poly(beta-D-mannuronate) lyase activity and alginic acid catabolic process. (672 aa)    
Predicted Functional Partners:
GBAG_2393
Putative exported protein; Protein involved in poly(beta-D-mannuronate) lyase activity and alginic acid catabolic process.
 
     0.825
GBAG_3322
Pectin degradation protein.
 
   
 0.747
GBAG_4111
Major facilitator superfamily (MFS) transporter; Protein involved in transmembrane transport.
 
    0.621
GBAG_2757
Hexuronate transporter; Protein involved in transmembrane transport and D-galacturonate catabolic process.
 
    0.616
GBAG_4162
Hexuronate transporter; Protein involved in transmembrane transport and D-galacturonate catabolic process.
 
    0.602
exuT
Hexuronate transporter; Protein involved in transmembrane transport and D-galacturonate catabolic process.
 
    0.586
dgoT
Protein involved in transporter activity, transmembrane transport and transport.
  
     0.584
GBAG_0252
4-hydroxyphenylpyruvate dioxygenase; Protein involved in transmembrane transport.
  
     0.572
garP
D-galactarate permease; Protein involved in transporter activity, transmembrane transport and transport.
 
    0.518
GBAG_0200
Putative sodium-solute symporter; Protein involved in transporter activity, transport and transmembrane transport; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.515
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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