STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_2602dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)    
Predicted Functional Partners:
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 0.997
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
 0.996
rfbB
dTDP-glucose 4,6-dehydratase; Protein involved in catalytic activity, coenzyme binding, dTDP-glucose 4,6-dehydratase activity, O antigen biosynthetic process, dTDP-rhamnose biosynthetic process, cellular metabolic process and nucleotide-sugar metabolic process; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.991
GBAG_2607
WxcM family protein; FIG01210424.
 
    0.832
GBAG_2601
dTDP-rhamnosyl transferase; Protein involved in glycolipid biosynthetic process.
 
  
 0.828
GBAG_2603
Protein involved in biosynthetic process.
  
  
 0.812
GBAG_2604
WzxE family protein; Protein involved in polysaccharide biosynthetic process.
  
  
 0.810
GBAG_1694
UDP-glucose dehydrogenase; Protein involved in oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, NAD binding and oxidation-reduction process.
  
  
 0.800
ugd
UDP-glucose dehydrogenase; Protein involved in oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, NAD binding and oxidation-reduction process.
  
  
 0.800
GBAG_2597
Mannose-1-phosphate guanylyltransferase; Protein involved in nucleotidyltransferase activity, lipopolysaccharide biosynthetic process, biosynthetic process, polysaccharide metabolic process and polysaccharide biosynthetic process; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.775
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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