STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_2677AraC family transcriptional regulator; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding and regulation of transcription, DNA-templated. (324 aa)    
Predicted Functional Partners:
GBAG_2678
Putative exported protein; Protein involved in hydrolase activity.
 
   
 0.609
GBAG_0336
AraC family transcriptional regulator; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding and regulation of transcription, DNA-templated.
  
   0.561
rhaR
L-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose.
 
 
 0.554
GBAG_1797
AraC family transcriptional regulator; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding and regulation of transcription, DNA-templated.
  
   0.535
GBAG_2536
AraC family transcriptional regulator; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding and regulation of transcription, DNA-templated.
  
   0.527
GBAG_1811
Rhodanese family sulfurtransferase.
 
    0.523
marA
MarA family multiple antibiotic resistance protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding, response to antibiotic and regulation of transcription, DNA-templated.
  
   0.508
GBAG_2679
Isochorismatase; Protein involved in catalytic activity and metabolic process.
 
    0.495
soxS
SoxS family regulatory protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding and regulation of transcription, DNA-templated.
  
   0.478
RamA
RamA family transcriptional activator; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding, response to antibiotic and regulation of transcription, DNA-templated.
  
   0.418
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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