STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfdCProtein involved in transporter activity and transport. (321 aa)    
Predicted Functional Partners:
NirD
Nitrite reductase [NAD(P)H] large subunit; Protein involved in oxidoreductase activity, flavin adenine dinucleotide binding, heme binding, iron-sulfur cluster binding, nitrite reductase [NAD(P)H] activity, NADP binding, 2 iron, 2 sulfur cluster binding, oxidation-reduction process and nitrate assimilation; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.641
can
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.639
GBAG_1565
Osmotically-inducible lipoprotein E.
  
   
 0.543
ccmA
ATPase component of an ABC superfamily cytochrome c biogenesis transporter; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
     
 0.524
yegS
Diacylglycerol kinase catalytic domain-containing transcriptional regulator; Probably phosphorylates lipids; the in vivo substrate is unknown; Belongs to the diacylglycerol/lipid kinase family. YegS lipid kinase subfamily.
 
  
 0.504
ccmB
Cytochrome c-type biogenesis protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
       0.489
GBAG_1515
Hypothetical protein.
  
     0.447
cysG
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
  
 0.427
ccmC
Cytochrome c-type biogenesis putative heme lyase; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
    0.423
GBAG_2192
Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit; Protein involved in oxidoreductase activity, catalytic activity, oxidoreductase activity, acting on CH-OH group of donors, flavin adenine dinucleotide binding and oxidation-reduction process.
  
     0.415
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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