STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgrRSgrR family transcriptional activator; Protein involved in transporter activity, (DEPRECATED) transcription and transport. (552 aa)    
Predicted Functional Partners:
flgM
Flagellin biosynthesis negative regulator; Protein involved in negative regulation of transcription, DNA-templated.
  
     0.669
GBAG_2279
Protein involved in biological_process.
  
     0.654
yniB
Putative membrane protein; Protein involved in SOS response and cellular response to DNA damage stimulus.
  
     0.653
bssS
Putative cytoplasmic protein.
  
     0.644
ynfB
Putative secreted protein; Protein involved in biological_process; Belongs to the UPF0482 family.
  
     0.642
GBAG_4273
Putative membrane protein; Protein involved in biological_process.
  
     0.603
thiP
Membrane component of an ABC superfamily thiamine transporter; Protein involved in transporter activity, thiamine transport, thiamine pyrophosphate transport and transport.
 
     0.593
SgrT
Protein involved in biological_process.
       0.588
thiB
Periplasmic substrate-binding component of an ABC superfamily thiamine transporter; Protein involved in ATP binding, thiamine-transporting ATPase activity, transporter activity, thiamine binding, thiamine transport, thiamine pyrophosphate transport and transport.
 
   
 0.578
uspB
Universal stress protein B.
  
     0.575
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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