STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulose kinase; Protein involved in phosphotransferase activity, alcohol group as acceptor, xylulokinase activity, xylulose metabolic process, D-xylose metabolic process and carbohydrate metabolic process. (484 aa)    
Predicted Functional Partners:
xylA
Protein involved in xylose isomerase activity, pentose-phosphate shunt and D-xylose metabolic process; Belongs to the xylose isomerase family.
 
 
 0.990
araD
L-ribulose-5-phosphate 4-epimerase; Involved in the degradation of L-arabinose. Catalyzes the interconversion of L-ribulose 5-phosphate (LRu5P) and D-xylulose 5- phosphate (D-Xu5P) via a retroaldol/aldol mechanism (carbon-carbon bond cleavage analogous to a class II aldolase reaction).
 
 
 0.942
rpe
Ribulose-phosphate 3-epimerase; Protein involved in racemase and epimerase activity, acting on carbohydrates and derivatives, catalytic activity, pentose-phosphate shunt, carbohydrate metabolic process and metabolic process; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.922
GBAG_0187
ATP synthase delta chain; Protein involved in biological_process.
    
  0.904
rhaU
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.667
GBAG_3999
AraC family transcriptional regulator; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding, DNA binding and regulation of transcription, DNA-templated.
 
 
 
 0.628
rhaA
Protein involved in L-rhamnose isomerase activity, manganese ion binding, rhamnose catabolic process and rhamnose metabolic process.
  
  
 0.608
xylF
Periplasmic substrate-binding component of an ABC superfamily xylose transporter; Protein involved in monosaccharide binding and D-xylose transport.
 
   
 0.591
GBAG_1836
Transketolase; Overlaps another CDS with the same product name.
  
 
 0.545
Tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.545
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.