STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaBProtein involved in lipopolysaccharide biosynthetic process and biosynthetic process. (362 aa)    
Predicted Functional Partners:
GBAG_4244
UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; Protein involved in transferase activity, transferring glycosyl groups, lipopolysaccharide 3-alpha-galactosyltransferase activity and lipopolysaccharide biosynthetic process.
 
 0.996
rfaG
UDP-glucose:(heptosyl) LPS alpha-1,3-glucosyltransferase; Protein involved in lipopolysaccharide biosynthetic process and biosynthetic process.
 
 
 0.992
rfaJ
UDP-galactose:(galactosyl) LPS alpha-1,2-galactosyltransferase; Protein involved in lipopolysaccharide 3-alpha-galactosyltransferase activity, transferase activity, transferring glycosyl groups and lipopolysaccharide biosynthetic process.
 
 0.991
rfaP
heptosyl-I-kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
 
 0.989
rfaQ
Lipopolysaccharide heptosyltransferase III; Protein involved in transferase activity, transferring glycosyl groups and metabolic process.
 
 
 0.977
GBAG_4248
O-antigen ligase.
  
 
 0.920
rfaC
Lipopolysaccharide heptosyltransferase I; Protein involved in transferase activity, transferring glycosyl groups, lipopolysaccharide heptosyltransferase activity, lipopolysaccharide core region biosynthetic process, metabolic process and lipopolysaccharide biosynthetic process.
  
 
 0.915
rfaF
ADP-heptose--lipooligosaccharide heptosyltransferase II; Protein involved in transferase activity, transferring glycosyl groups, lipopolysaccharide core region biosynthetic process, metabolic process and lipopolysaccharide biosynthetic process.
  
 
 0.914
GBAG_4239
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.908
GBAG_4245
Lipopolysaccharide biosynthesis protein; Protein involved in biological_process.
 
    0.672
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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