STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GBAG_4345Protein involved in biological_process. (98 aa)    
Predicted Functional Partners:
traW
TraW family plasmid conjugative transfer pilus assembly protein.
       0.773
trbI
TrbI family plasmid conjugative transfer protein.
       0.773
traC
TraC family plasmid conjugative transfer pilus assembly protein.
       0.773
traV
TraV family plasmid conjugative transfer pilus assembly protein.
       0.773
GBAG_4350
TraB family plasmid conjugative transfer pilus assembly protein.
       0.572
traK
TraK family plasmid conjugative transfer pilus assembly protein.
       0.572
GBAG_4352
TraE family plasmid conjugative transfer pilus assembly protein; Protein involved in conjugation.
       0.564
traL
TraL family protein; Membrane protein involved in F pilin formation.
       0.564
GBAG_4354
FIG00627158; Protein involved in conjugation.
       0.564
GBAG_4344
Protein involved in biological_process.
       0.432
Your Current Organism:
Buttiauxella agrestis
NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320
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