STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbh1Hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains; High confidence in function and specificity. (1042 aa)    
Predicted Functional Partners:
aguA
Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans; High confidence in function and specificity; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.907
DTL3_0709
Hypothetical protein; Putative part of Lanthionine synthetase C-like domain associated with serine/threonine kinases; High confidence in function and specificity.
    
 
 0.759
DTL3_1326
Polysaccharide deacetylase; Predicted to hydrolyze the glucosidic bonds in xylan; High confidence in function and specificity.
 
   
 0.745
ganB
Arabinogalactan endo-1,4-beta-galactosidase; Glycosyl hydrolase family 53; The enzyme specifically hydrolyzes (1->4)-beta-D-galactosidic linkages in type I arabinogalactans; High confidence in function and specificity.
  
     0.724
DTL3_1325
SGNH hydrolases are a diverse family of lipases and esterases; Family membership.
 
   
 0.704
celA
Cellulase; The hydrolysis of the 1,4-beta-D-glycosidic linkages in cellulose; High confidence in function and specificity.
 
   
 0.675
licB
Licheninase; Lichenan + H2O -> a short glucan; High confidence in function and specificity.
 
   
 0.635
dppA3
ABC-type dipeptide transport system, periplasmic component; High confidence in function and specificity.
  
    0.570
mndA
Beta-mannosidase; Reaction: beta-D-mannoside + H2O -> beta-D-mannose + a non glycosylated sugar acceptor; High confidence in function and specificity; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.552
chiA
Chitinase; Glycosyl hydrolases family 18; chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine; Family membership; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.538
Your Current Organism:
Defluviitoga tunisiensis
NCBI taxonomy Id: 1006576
Other names: D. tunisiensis, DSM 23805, Defluviitoga tunisiensis Ben Hania et al. 2012, JCM 17210, Thermotogaceae bacterium SulfLac1, strain SulfLac1
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