STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX24853.1Predicted aconitase subunit 1. (588 aa)    
Predicted Functional Partners:
SDX24977.1
Proline racemase; Belongs to the proline racemase family.
 
 
 0.974
SDX24014.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
 
 0.879
SDX24949.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
    0.866
SDX24881.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
     0.838
SDX24909.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
     0.819
SDX25127.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.790
SDX72014.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
  0.704
SDX24826.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
    0.674
SDX25008.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.585
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.
 
  
  0.415
Your Current Organism:
Pseudomonas kuykendallii
NCBI taxonomy Id: 1007099
Other names: LMG 26364, LMG:26364, NRRL B-59562, P. kuykendallii, Pseudomonas kuykendallii Hunter and Manter 2012, Pseudomonas sp. H2(2011), Pseudomonas sp. H6(2011), Pseudomonas sp. H7(2011), strain H2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.