Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AV654_02030 | AV654_20880 | GCA_000213315_05504 | GCA_000213315_00736 | Unannotated protein. | Unannotated protein. | 0.433 |
AV654_02030 | GCA_000213315_05502 | GCA_000213315_05504 | GCA_000213315_05502 | Unannotated protein. | Unannotated protein. | 0.626 |
AV654_02030 | pqqB | GCA_000213315_05504 | GCA_000213315_05501 | Unannotated protein. | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | 0.921 |
AV654_02030 | pqqC | GCA_000213315_05504 | GCA_000213315_05503 | Unannotated protein. | Unannotated protein; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | 0.964 |
AV654_02030 | pqqE | GCA_000213315_05504 | GCA_000213315_05505 | Unannotated protein. | Unannotated protein; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | 0.966 |
AV654_20880 | AV654_02030 | GCA_000213315_00736 | GCA_000213315_05504 | Unannotated protein. | Unannotated protein. | 0.433 |
AV654_20880 | AV654_25200 | GCA_000213315_00736 | GCA_000213315_05277 | Unannotated protein. | Unannotated protein. | 0.459 |
AV654_20880 | pqqB | GCA_000213315_00736 | GCA_000213315_05501 | Unannotated protein. | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | 0.556 |
AV654_20880 | pqqC | GCA_000213315_00736 | GCA_000213315_05503 | Unannotated protein. | Unannotated protein; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | 0.527 |
AV654_20880 | pqqE | GCA_000213315_00736 | GCA_000213315_05505 | Unannotated protein. | Unannotated protein; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | 0.581 |
AV654_25200 | AV654_20880 | GCA_000213315_05277 | GCA_000213315_00736 | Unannotated protein. | Unannotated protein. | 0.459 |
AV654_25200 | pqqE | GCA_000213315_05277 | GCA_000213315_05505 | Unannotated protein. | Unannotated protein; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | 0.449 |
GCA_000213315_05502 | AV654_02030 | GCA_000213315_05502 | GCA_000213315_05504 | Unannotated protein. | Unannotated protein. | 0.626 |
GCA_000213315_05502 | pqqB | GCA_000213315_05502 | GCA_000213315_05501 | Unannotated protein. | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | 0.833 |
GCA_000213315_05502 | pqqC | GCA_000213315_05502 | GCA_000213315_05503 | Unannotated protein. | Unannotated protein; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | 0.433 |
GCA_000213315_05502 | pqqE | GCA_000213315_05502 | GCA_000213315_05505 | Unannotated protein. | Unannotated protein; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | 0.533 |
pqqB | AV654_02030 | GCA_000213315_05501 | GCA_000213315_05504 | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Unannotated protein. | 0.921 |
pqqB | AV654_20880 | GCA_000213315_05501 | GCA_000213315_00736 | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Unannotated protein. | 0.556 |
pqqB | GCA_000213315_05502 | GCA_000213315_05501 | GCA_000213315_05502 | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Unannotated protein. | 0.833 |
pqqB | pqqC | GCA_000213315_05501 | GCA_000213315_05503 | Unannotated protein; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Unannotated protein; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | 0.958 |
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