BN1708_000310 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_000310

Protein kinase domain-containing protein. (435 aa)

Predicted Functional Partners:

BN1708_007292

0.622

BN1708_001358

0.622

BN1708_016806

0.622

BN1708_011052

0.474

BN1708_013835

0.474

BN1708_004508

0.441

BN1708_004513

0.441

BN1708_020119

0.441

BN1708_010355

0.440

BN1708_004597

0.440

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000310	BN1708_001358	A0A0G4KDA4	A0A0G4MTM5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.622
BN1708_000310	BN1708_004508	A0A0G4KDA4	A0A0G4M0Q0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.441
BN1708_000310	BN1708_004513	A0A0G4KDA4	A0A0G4M0Q3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.441
BN1708_000310	BN1708_004597	A0A0G4KDA4	A0A0G4M1I8	Protein kinase domain-containing protein.	RRM domain-containing protein.	0.440
BN1708_000310	BN1708_007292	A0A0G4KDA4	A0A0G4MS97	Protein kinase domain-containing protein.	Uncharacterized protein.	0.622
BN1708_000310	BN1708_010355	A0A0G4KDA4	A0A0G4KQW4	Protein kinase domain-containing protein.	RRM domain-containing protein.	0.440
BN1708_000310	BN1708_011052	A0A0G4KDA4	A0A0G4KXE1	Protein kinase domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.474
BN1708_000310	BN1708_013835	A0A0G4KDA4	A0A0G4LQA3	Protein kinase domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.474
BN1708_000310	BN1708_016806	A0A0G4KDA4	A0A0G4N1Z1	Protein kinase domain-containing protein.	RRM domain-containing protein.	0.622
BN1708_000310	BN1708_020119	A0A0G4KDA4	A0A0G4MRL5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.441
BN1708_001358	BN1708_000310	A0A0G4MTM5	A0A0G4KDA4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.622
BN1708_001358	BN1708_004508	A0A0G4MTM5	A0A0G4M0Q0	Uncharacterized protein.	Uncharacterized protein.	0.934
BN1708_001358	BN1708_004513	A0A0G4MTM5	A0A0G4M0Q3	Uncharacterized protein.	Uncharacterized protein.	0.934
BN1708_001358	BN1708_004597	A0A0G4MTM5	A0A0G4M1I8	Uncharacterized protein.	RRM domain-containing protein.	0.745
BN1708_001358	BN1708_007292	A0A0G4MTM5	A0A0G4MS97	Uncharacterized protein.	Uncharacterized protein.	0.891
BN1708_001358	BN1708_010355	A0A0G4MTM5	A0A0G4KQW4	Uncharacterized protein.	RRM domain-containing protein.	0.745
BN1708_001358	BN1708_011052	A0A0G4MTM5	A0A0G4KXE1	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.939
BN1708_001358	BN1708_013835	A0A0G4MTM5	A0A0G4LQA3	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.939
BN1708_001358	BN1708_020119	A0A0G4MTM5	A0A0G4MRL5	Uncharacterized protein.	Uncharacterized protein.	0.934
BN1708_004508	BN1708_000310	A0A0G4M0Q0	A0A0G4KDA4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.441

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About