STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_016999RBR-type E3 ubiquitin transferase. (181 aa)    
Predicted Functional Partners:
BN1708_001987
RBR-type E3 ubiquitin transferase.
     
 0.533
BN1708_018032
Uncharacterized protein.
     
 0.533
BN1708_016987
Tr-type G domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.457
BN1708_017691
Uncharacterized protein.
   
 
 0.457
BN1708_004978
Uncharacterized protein.
   
 
 0.457
BN1708_016408
GTP_EFTU_D3 domain-containing protein.
   
 
 0.457
BN1708_001990
RING-type domain-containing protein.
     
 0.440
BN1708_014995
RBR-type E3 ubiquitin transferase.
     
 0.440
BN1708_007832
Uncharacterized protein.
     
 0.440
BN1708_006674
E2_bind domain-containing protein.
   
 
  0.411
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.