BN1708_002090 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_002090

Uncharacterized protein. (205 aa)

Predicted Functional Partners:

BN1708_013664

0.992

BN1708_006623

0.992

BN1708_006622

0.992

BN1708_016535

0.992

BN1708_016839

0.992

BN1708_003245

0.984

BN1708_007005

0.984

BN1708_011128

0.977

BN1708_012077

0.977

BN1708_003936

0.977

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_002090	BN1708_003245	A0A0G4KH69	A0A0G4LD50	Uncharacterized protein.	Uncharacterized protein.	0.984
BN1708_002090	BN1708_003936	A0A0G4KH69	A0A0G4LS35	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.977
BN1708_002090	BN1708_006622	A0A0G4KH69	A0A0G4MLT9	Uncharacterized protein.	NPL4 domain-containing protein.	0.992
BN1708_002090	BN1708_006623	A0A0G4KH69	A0A0G4MLB0	Uncharacterized protein.	MPN domain-containing protein.	0.992
BN1708_002090	BN1708_007005	A0A0G4KH69	A0A0G4MPU9	Uncharacterized protein.	Uncharacterized protein.	0.984
BN1708_002090	BN1708_011128	A0A0G4KH69	A0A0G4KWV3	Uncharacterized protein.	Uncharacterized protein.	0.977
BN1708_002090	BN1708_012077	A0A0G4KH69	A0A0G4L681	Uncharacterized protein.	AAA domain-containing protein.	0.977
BN1708_002090	BN1708_013664	A0A0G4KH69	A0A0G4LMQ5	Uncharacterized protein.	MPN domain-containing protein.	0.992
BN1708_002090	BN1708_016535	A0A0G4KH69	A0A0G4MR16	Uncharacterized protein.	zf-NPL4 domain-containing protein.	0.992
BN1708_002090	BN1708_016839	A0A0G4KH69	A0A0G4N303	Uncharacterized protein.	NPL4 domain-containing protein.	0.992
BN1708_003245	BN1708_002090	A0A0G4LD50	A0A0G4KH69	Uncharacterized protein.	Uncharacterized protein.	0.984
BN1708_003245	BN1708_003936	A0A0G4LD50	A0A0G4LS35	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.959
BN1708_003245	BN1708_006622	A0A0G4LD50	A0A0G4MLT9	Uncharacterized protein.	NPL4 domain-containing protein.	0.979
BN1708_003245	BN1708_006623	A0A0G4LD50	A0A0G4MLB0	Uncharacterized protein.	MPN domain-containing protein.	0.979
BN1708_003245	BN1708_011128	A0A0G4LD50	A0A0G4KWV3	Uncharacterized protein.	Uncharacterized protein.	0.959
BN1708_003245	BN1708_012077	A0A0G4LD50	A0A0G4L681	Uncharacterized protein.	AAA domain-containing protein.	0.959
BN1708_003245	BN1708_013664	A0A0G4LD50	A0A0G4LMQ5	Uncharacterized protein.	MPN domain-containing protein.	0.979
BN1708_003245	BN1708_016535	A0A0G4LD50	A0A0G4MR16	Uncharacterized protein.	zf-NPL4 domain-containing protein.	0.979
BN1708_003245	BN1708_016839	A0A0G4LD50	A0A0G4N303	Uncharacterized protein.	NPL4 domain-containing protein.	0.979
BN1708_003936	BN1708_002090	A0A0G4LS35	A0A0G4KH69	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.977

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

27

average node degree:

4.91

avg. local clustering coefficient:

0.913

expected number of edges:

26

PPI enrichment p-value:

0.464

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 272

1.7

4.24

8.45e-16

GO:0032543

Mitochondrial translation

5 of 43

2.16

3.53

4.14e-08

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 152

1.95

6.09

7.34e-19

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005761

Mitochondrial ribosome

11 of 61

2.35

9.44

3.08e-23

GO:0005762

Mitochondrial large ribosomal subunit

9 of 33

2.53

8.95

1.05e-19

GO:0044391

Ribosomal subunit

11 of 140

1.99

6.52

5.46e-20

GO:0098798

Mitochondrial protein-containing complex

11 of 173

1.9

5.86

2.20e-19

GO:0005763

Mitochondrial small ribosomal subunit

2 of 24

2.01

1.14

0.0064

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:6472

Organellar ribosome

11 of 64

2.33

9.15

1.14e-22

CL:6476

Organellar ribosome

6 of 22

2.53

5.66

5.68e-12

CL:6546

Organellar large ribosomal subunit, and Ribosomal protein S9

5 of 21

2.47

4.46

1.69e-09

CL:6504

Mixed, incl. Ribosomal protein L25/L23, and Ribosomal protein L30p/L7e

2 of 5

2.7

1.48

0.0020

CL:6549

Mixed, incl. Ribosomal protein S9, and Ribosomal protein L25/L23

2 of 6

2.62

1.43

0.0024

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

7 of 177

1.69

3.02

3.43e-09

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-72766

Translation

11 of 259

1.72

4.45

1.38e-16

MAP-392499

Metabolism of proteins

11 of 969

1.15

1.67

1.15e-10

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005762

Mitochondrial large ribosomal subunit

9 of 32

2.54

9.03

8.28e-20

GOCC:0005761

Mitochondrial ribosome

11 of 69

2.3

8.96

1.34e-22

GOCC:0044391

Ribosomal subunit

11 of 146

1.97

6.38

7.99e-20

GOCC:0098798

Mitochondrial protein complex

11 of 160

1.93

6.12

1.05e-19

GOCC:0005763

Mitochondrial small ribosomal subunit

2 of 36

1.84

0.92

0.0165

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

6 of 106

1.85

3.12

2.79e-08

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