STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_017076RRM domain-containing protein. (160 aa)    
Predicted Functional Partners:
BN1708_011612
Uncharacterized protein.
   
  
 0.609
BN1708_003485
Uncharacterized protein.
   
  
 0.609
BN1708_020606
ABC transporter domain-containing protein.
   
  
 0.609
BN1708_001882
WD_REPEATS_REGION domain-containing protein.
   
    0.538
BN1708_005626
Uncharacterized protein.
  
     0.487
BN1708_013221
DUF2431 domain-containing protein.
   
 
 0.481
BN1708_011443
Uncharacterized protein.
   
    0.476
BN1708_007350
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
    0.476
BN1708_000474
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
      
 0.457
BN1708_017203
Uncharacterized protein.
  
  
 0.437
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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